I am a permanent member of the ALCoV team, ISIT, Université d'Auvergne, focusing on endoscopic surgery. ALCoV's scientific project brings new tools for surgical gesture training and decision making using virtual reality and for computer vision and augmented reality aided surgery. I am interested in extracting structured mesh from pre-operative images, to enrich the per-operative tools.

• 2009-2011: Olivier Salvado, Biomedical Imaging Group, Australian eHealth Research Centre, CSIRO
  • I am involved in a FAST project (EGIDE), and I was during one month (August 2010) in Brisbane, working at CSIRO on topological correction of volumic data.
• 2006-2009: Vincent Barra, LIMOS, UMR CNRS, Université Blaise Pascal
• 2006: Jean-Jacques Lemaire, ERIM, Université d'Auvergne
• 2005: Christian Barillot, ViSaGeS, IRISA.

• Oscar Acosta, Jurgen Fripp, Vincent Dore, Pierrick Bourgeat, Jean-Marie Favreau, Gaël Chételat, Andrea Rueda, Victor L. Villemagne, Cassandra Szoeke, David Ames, Kathryn A. Ellis, Ralph N. Martins, Colin L. Masters, Christopher C. Rowe, Erik Bonner, Florence Gris, Di Xiao, Parnesh Raniga, Vincent Barra, Olivier Salvado Cortical surface mapping using topology correction, partial flattening and 3D shape context-based non-rigid registration for use in quantifying atrophy in Alzheimer's disease. Journal of Neuroscience Methods 205 (1) pp. 96-109. (2011). doi web bibtex

  @article{Acosta2011,
  title = "Cortical surface mapping using topology correction, partial flattening and 3D shape context-based non-rigid registration for use in quantifying atrophy in Alzheimer's disease",
  journal = "Journal of Neuroscience Methods",
  volume = "205",
  number = "1",
  pages = "96-109",
  year = "2011",
  note = "",
  issn = "0165-0270",
  doi = "10.1016/j.jneumeth.2011.12.011",
  url = "http://www.sciencedirect.com/science/article/pii/S0165027011007485",
  author = "Oscar Acosta and Jurgen Fripp and Vincent Dore and Pierrick Bourgeat and Jean-Marie Favreau and Gaël Chételat and Andrea Rueda and Victor L. Villemagne and Cassandra Szoeke and David Ames and Kathryn A. Ellis and Ralph N. Martins and Colin L. Masters and Christopher C. Rowe and Erik Bonner and Florence Gris and Di Xiao and Parnesh Raniga and Vincent Barra and Olivier Salvado",
   keywords = { medical-imaging,  algorithmic-geometry}
  }

• F. Gris, J.-M. Favreau, O. Acosta, V. Barra, O. Salvado A combined voxel and surface based method for topology correction of brain surfaces. In SPIE medical imaging. San Diego, California, USA (2010). bibtex

  @conference{Gris2010,
  	title = {A combined voxel and surface based method for topology correction of brain surfaces},
  	booktitle = {SPIE medical imaging},
  	year = {2010},
  	address = {San Diego, California, USA},
  	author = {Gris, F. and Favreau, J.-M. and Acosta, O. and Barra, V. and Salvado, O.},
   keywords = { medical-imaging,  algorithmic-geometry}
  }

• J.-M. Favreau, V. Barra Conformal Flattening of the Cortical Surface using a Topological and Geometrical Cutting. In SEECCM, South-East European Conference on Computational Mechanics. Island of Rhodes, Greece (2009). bibtex

  @conference{Favreau2009a,
  	title = {Conformal Flattening of the Cortical Surface using a Topological and Geometrical Cutting},
  	booktitle = {SEECCM, South-East European Conference on Computational Mechanics},
  	year = {2009},
  	address = {Island of Rhodes, Greece},
  	author = {Favreau, J.-M. and Barra, V.},
   keywords = { medical-imaging, algorithmic-geometry}
  }

• J.-M. Favreau Outils pour le pavage de surfaces. (2009). web bibtex

  @phdthesis{FavreauPhDThesis,
   author =      "Favreau, J.-M.",
   title =       "Outils pour le pavage de surfaces",
   school =      "Université Blaise Pascal",
   year =        2009,
   keywords = { medical-imaging, computer-graphics, algorithmic-geometry, procedural-textures},
   url = "http://tel.archives-ouvertes.fr/tel-00440730/en/"
  }

• J-M Favreau, S. Hemm, C. Nuti, J. Coste, V. Barra, J.-J. Lemaire A Tool for Topographic Analysis of Electrode Contacts in Human Cortical Stimulation. In MMBIA'07. IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis ICCV 2007. Rio de Janeiro, Brazil (October/2007). bibtex

  @InProceedings{Favreau2007,
    author	 = {Favreau, J-M and Hemm, S. and Nuti, C. and Coste, J. and Barra, V. and Lemaire, J.-J. },
    title          = {A Tool for Topographic Analysis of Electrode Contacts in Human Cortical Stimulation},
    bookTitle      = {MMBIA'07},
    month          = {October},
    year           = {2007},
    address        = {Rio de Janeiro, Brazil},
    publisher      = {ICCV 2007},
    journal        = {IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis},
   keywords = { medical-imaging}
  }

• J.-M. Favreau Atlas probabiliste des frontières fonctionnelles des aires visuelles. (2005). bibtex

  @MastersThesis{FavreauMasterThesis,
   author =      "Favreau, J.-M.",
   title =       " Atlas probabiliste des frontières fonctionnelles des aires visuelles",
   school =      "Université de Rennes 1",
   type =        {Mémoire de Master STS},
   year =        2005,
   keywords = { medical-imaging}
  }

• J.-M. Favreau, C. Ciofolo, C. Barillot Extraction et étude statistique du sillon calcarin. In MajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC . pp. 423-426 . Rennes (2005). web bibtex

  @inproceedings{Favreau05,
  	title = { Extraction et étude statistique du sillon calcarin},
  	author = {Favreau,  J.-M. and Ciofolo, C. and Barillot, C.},
  	booktitle = {MajecSTIC 2005 : Manifestation des Jeunes Chercheurs francophones dans les domaines des STIC },
  	pages = {423-426 },
  	address = {Rennes },
  	editor = {Alexandre Vautier, Sylvie Saget },
  	year = {2005},
  	URL = {http://hal.archives-ouvertes.fr/inria-00000830/en/},
   keywords = { medical-imaging}
  }